rs46963494 SNP Detail

Summary

• ID
  rs46963494
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:12328931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCTGAGGT CTAATTACCA
  GTGTAATTAG GGTAAGAACA AGTTGCTCTC TGCAGAGGGC CTCTGTGCGC TGGGAGAAAG
  TGTTTTTAAG CATTCCCATG GAGTCGCCTG GGAGGGAAGG CGACCCCATG CCGAGCGCAG
  ACTTGGTCTT TAGCTTGTCC TATGTAATTT TGCGAACTGT TTGAATGTGC TAACGAGGCA
  S
  GTTATTTTTA GCCATGTCAG CAAAGGGATC CAATTCCTGC ACAGTTGTGC CTCTTGCGTA
  AGTGATTTGT TTTCTAAGGA CCTTCATGAG AGCCAGAGAA ATTTGCCTTC CCTGGAATGA
  GGCCCTGCTG ACCCTGGGCT CGCCTGGGGC AGAGGGTTGG GCAGTGGGGA CCCTAGAGAT
  GGCCCTCTCT GCAATAGGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60572183	NES16031354	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C		C	G	G		C
ss322497665	CHEV_8_12278931	CHEVERUD	SCREENING_POP	f	SNP									C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46963494					SNP	C	C	C	C	C	C	C	C	C	C	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60572183	NES16031354	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:12328931 () rs orientation: forward

Symbol	Name	Function Class
A230072I06Rik	RIKEN cDNA A230072I06 gene	mRNA-UTR
Rr659697	regulatory region 659697	within coordinates