rs46965418 SNP Detail

Summary

• ID
  rs46965418
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:84339954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACAGCTCT CCTGAGATTT
  CCCCAGCCCA AACAGGATTG CCTAGAGTCC TGTCTTTATT TGAAATTATG TTATTTTGTT
  AGTCTTGGGG TTGTGCCTTT TGGTGTTTTA CAATGTTTAT CTTTGTCACT GTGCTCTCTT
  TACCTATTTC CCTGAAATTT CTGCCCTATT TTTACAGTAA TAGGGGCTCA TGGTCACAAG
  R
  TTGAGATACG GCTAACCATG TGTGGTTTGG GCTGCTTTCT GTAATCCTGT AGAATAAGGA
  GGAGACAGAA TAGAGGACAT GGTGGAGGTC AGGTAGAATT CTTTGAAGAA AAGGTGGCAT
  TTGAAAAATT CTTATGACTT CATGGAAAAC GAAAGGAAGT GTTCCTGAAG AGGGCTTGGG
  AGAAACACAC AATGCTCTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss145208997	ENSMUSSNP5830043	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs46965418					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:84339954 () rs orientation: forward

Symbol	Name	Function Class
2610206C17Rik	RIKEN cDNA 2610206C17 gene	within coordinates
Cpgi19383	CpG island 19383	237 bp distal
Rr400423	regulatory region 400423	631 bp downstream
Rr650631	regulatory region 650631	1713 bp distal
Rr650632	regulatory region 650632	992 bp distal
Rr650633	regulatory region 650633	800 bp distal
Rr650634	regulatory region 650634	299 bp distal
Tssr73444	transcription start site region 73444	925 bp upstream
Tssr73445	transcription start site region 73445	912 bp upstream
Tssr73446	transcription start site region 73446	847 bp upstream
Tssr73447	transcription start site region 73447	828 bp upstream
Tssr73448	transcription start site region 73448	807 bp upstream
Tssr73449	transcription start site region 73449	782 bp upstream
Tssr73450	transcription start site region 73450	755 bp upstream
Zfand6	zinc finger, AN1-type domain 6	730 bp upstream