rs46965436 SNP Detail

Summary

• ID
  rs46965436
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99509599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCCTTTTCC TTTTATGAGT AGCTTCTTTT ACTTTGTATA
  TCTGTTAGCT TTCTATGAAA GAATCTCCTG ACTTCTTTCC TGAAGCAGGA GCTGGGATCT
  Y
  ACTCTCACTC TCAAGGTCTC TACCTAATAA CTGAAGTCTC CCTACTAGGC CTCGTCTCTT
  AAAGGTCACA CCAAACTCCC ATAGCTCCAT ACTGGGGAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61443440	NES16824842	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46965436					SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61443440	NES16824842	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99509599 () rs orientation: forward

Symbol	Name	Function Class
Dzip1l	DAZ interacting protein 1-like	1950 bp upstream
Gm68333	predicted gene, 68333	within coordinates
Rr685432	regulatory region 685432	1506 bp proximal
Tssr86687	transcription start site region 86687	1985 bp upstream