rs46967008 SNP Detail

Summary

• ID
  rs46967008
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:23791773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTGTCCTTA CATGTCACCT ACGTTTATGT CCACACGTTA
  CTGCTGCTGT CGGCTGTCAT CAGAGCTGCT CTGTGTTGCA ACAGGAAACC AACCAAGGTA
  Y
  AGAGAGAGAG AGAGAGCTTG GGACTACTTA GTGCTCAGCC CTACACAGAC ATTTACATCG
  TCCCGCTCCA AGACTCAGCA GACATCATGG GAAAAAAGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148061173	ENSMUSSNP4454799	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss321489817	CHEV_5_23092593	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46967008					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:23791773 () rs orientation: forward

Symbol	Name	Function Class
Rr117577	regulatory region 117577	28 bp proximal
Rr117578	regulatory region 117578	1628 bp proximal
Srpk2	serine/arginine-rich protein specific kinase 2	within coordinates
Tssr1438	transcription start site region 1438	19 bp upstream
Tssr50280	transcription start site region 50280	148 bp upstream