rs46967355 SNP Detail

Summary

• ID
  rs46967355
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122296146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACAGGCA AGCAACCCCA
  CCCCAGATTG GCTCCGAGGG GTGATTCAGT GTTGAACTCC CACCCCGCCA TGTCGGTCAG
  ACTTCTGTCC CCAAGCAGCA GAGCCGGAAG GAGCTGGTGA GCCTCGCAGC GCGCAGCAGA
  CTGACAAAGT CCACCTTCAA CTTGCGCGCG CCAACTTCAC AACTTCCCTC TCCCGCCACA
  G
  GGGGTCTATT TCCCCCGCCC GTTTGGCGGA AGGATCCCGC GCGCGGTGGC GGAGTCGCGC
  TCAACCGTCT CCGCCCGGGC TCCGCCCCAC CCCCGCCCTA CGCGCTCAAA CCCCGCCCCT
  TCCCGGCGCC GGCCCCGCCC CCTTCCCGCG CGCTCTATGG GCCCGTAAAG AAGTCCCGGC
  CGGGCCGCTG CACTCCCGCG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss149186873	ENSMUSSNP7144924	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46967355					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122296146 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16545	CpG island 16545	within coordinates
Gm73495	predicted gene, 73495	17 bp upstream
Ppp1cc	protein phosphatase 1 catalytic subunit gamma	195 bp upstream
Rr124301	regulatory region 124301	within coordinates
Tssr48638	transcription start site region 48638	182 bp upstream