rs46968354 SNP Detail

Summary

• ID
  rs46968354
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:10609365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTACTATAT GCTGCCATTG
  CTTCCTGCTA CAAGAAACTC ATTCCAGCTG ACTTCTTCCA TCGTCCTACT CCCCGGCCTA
  CCACGACCCA CGACAAAATT CTATGCCCGT CTAATTTTCA CAAGGCTCCA CTTAGAGGCG
  AGGCGGGGTG TGGAGATCCG ATTTTCAGAC TTTTGGTAAC AGACAAACAG GCTACTCTGC
  M
  TCTGCAAAAT AAAACCCTCG CTATAATTAT AATCTAAGAC CCAATTCACT TCCGCTCGCA
  TCTCCCTACC GACTCGAAAC TTCCCTGAAG CTCTCAAAGG ACCTATTTCT ACCTGTCCCC
  CGGCTCCCAT CTCGAGCCTG CATTATTTCC TGAAATGGGA AACCCGGACA TCGCTCCCCT
  CGCAAGATGA AGACCCGGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146607052	ENSMUSSNP5420165	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss325524291	CHEV_18_10609363	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46968354					SNP	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10609365 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9702	CpG island 9702	67 bp proximal
Esco1	establishment of sister chromatid cohesion N-acetyltransferase 1	within coordinates
Rr533778	regulatory region 533778	within coordinates
Rr533779	regulatory region 533779	390 bp proximal
Rr533780	regulatory region 533780	734 bp proximal
Rr533781	regulatory region 533781	750 bp proximal
Rr533782	regulatory region 533782	1056 bp proximal
Tssr152429	transcription start site region 152429	683 bp downstream
Tssr152430	transcription start site region 152430	759 bp downstream
Tssr152431	transcription start site region 152431	904 bp downstream
Tssr152432	transcription start site region 152432	936 bp downstream
Tssr152433	transcription start site region 152433	981 bp downstream