rs46969309 SNP Detail

Summary

• ID
  rs46969309
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172152125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGACCGGCT CTGACATTGG AAGTCTGGCC CTGAGACATC
  TTGGGGTCAT TGGTATTCTT TGGCAAAGCT GGAATAAGAT GTATCAGGGA GGGTAGGGAA
  R
  GAGAGGCCAC CGGGGCCTCT GCAGGGAGAA GGCCTGAGAA GCAGAGGTAG GGCTTGGGGG
  AGTAGGGATA GGTGCAAAGT GGAGGCAGAG GCAGAGGGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120012364	PARCsnp_1.08449	PARC_SEQ	INBRED	f	SNP		G	A
ss146187940	ENSMUSSNP5217568	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss320124214	CHEV_1_174254689	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs46969309					SNP	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172152125 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1043	CpG island 1043	986 bp proximal
Gm36937	predicted gene, 36937	897 bp downstream
Gm70847	predicted gene, 70847	1722 bp upstream
Kcnj9	potassium inwardly-rectifying channel, subfamily J, member 9	within coordinates
Rr423524	regulatory region 423524	within coordinates
Rr423525	regulatory region 423525	347 bp proximal
Rr423526	regulatory region 423526	537 bp proximal
Rr423527	regulatory region 423527	1232 bp proximal
Rr423528	regulatory region 423528	1339 bp proximal
Rr423529	regulatory region 423529	1754 bp proximal
Tssr15210	transcription start site region 15210	1660 bp downstream
Tssr15211	transcription start site region 15211	1670 bp downstream
Tssr15212	transcription start site region 15212	1690 bp downstream