rs46969577 SNP Detail

Summary

• ID
  rs46969577
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:63283179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACTG GCACTGGAGC TCTGAGTCCC
  R
  CAGGCCCCTC CTCTGGCCCA GGGCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61818478	NES17756641	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A	A	G	A	A	A	A		G	A	A	G		A
ss149138179	ENSMUSSNP1324538	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A
ss324374652	CHEV_13_63236725	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46969577					SNP	A	A	A	G	A	A	G	A	A	A	A	A	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61818478	NES17756641	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:63283179 () rs orientation: forward

Symbol	Name	Function Class
Aopep	aminopeptidase O	within coordinates
Gm30409	predicted gene, 30409	852 bp downstream
Rr273239	regulatory region 273239	1422 bp proximal
Rr276922	regulatory region 276922	178 bp distal
Rr276923	regulatory region 276923	21 bp proximal
Rr284650	regulatory region 284650	1379 bp distal
Rr284651	regulatory region 284651	1506 bp proximal