rs46971236 SNP Detail

Summary

• ID
  rs46971236
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:34933692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGTCTCGCC AGTCCTTAAG
  ATGGTTTTAA ATGGTTTATA AGGTTGTAAC TTCAATTGTG AGTCAAAATA TCTGCATTAG
  GAACACCGCC TCACGTGGCT CCTGCATTTT CTAAAGCTCG CTGGGTTTAT CATTGTGTGT
  TTTGTTTGGA TTTAGGTGTA TCCCTGGGGA ACATTCTTTA AAACTTCAAA GTCTCCCCCA
  M
  CTTCCAAAGC CCTGGTCGCA AATGCTCTCA AGGGGTTCCC ATGTGCCTGT GCTCTTGGCA
  ACCACAGCCC AGGCCTTAGA ATCGGGCCCC ACACGGGAGC ACCTAGCCAT TTGGATTTTT
  ATGCATGCTG TAGATGTAGA TTGACGATCG GATTTGATGC TACAGACCTC CATTTTGGGA
  CTTTACTCAG CCTCGCCAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148805407	ENSMUSSNP5153854	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	C
ss322156708	CHEV_7_36019286	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46971236					SNP	C	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:34933692 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18864	CpG island 18864	292 bp proximal
Gm38989	predicted gene, 38989	within coordinates
Gm73040	predicted gene, 73040	1082 bp upstream
n-TTagt9	nuclear encoded tRNA threonine 9 (anticodon AGT)	503 bp downstream
Rr645337	regulatory region 645337	882 bp distal
Rr645338	regulatory region 645338	within coordinates
Rr645339	regulatory region 645339	364 bp proximal
Rr645340	regulatory region 645340	426 bp proximal
Rr645341	regulatory region 645341	1093 bp proximal