rs46972151 SNP Detail

Summary

• ID
  rs46972151
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:41364181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATTGGCACC CTCATGGCCT ACTCTCTGGT GGCAGCCTGT
  GTGCTTATTC TCAGGTGAGT CTCTATTGGT TCTCAAGAGT GTGTACCAGG TGGGATGTGG
  R
  AAGAAGGGAC AGTGAGAACT CTAAAAGGCA GCAGTGTCAC CAACATGGGA GGCCATGCCA
  TTAAAATAGT AGTATTGAAT ATGGGAGCAG ACTTGGCCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	MSM/Ms	SM/J
ss144675546	ENSMUSSNP3938841	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
ss322633656	CHEV_8_41996498	CHEVERUD	SCREENING_POP	f	SNP		A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	MSM/Ms	SM/J
rs46972151					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:41364181 () rs orientation: forward

Symbol	Name	Function Class
Slc7a2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	Intron
Tssr77035	transcription start site region 77035	1468 bp downstream
Tssr77036	transcription start site region 77036	286 bp downstream
Tssr77037	transcription start site region 77037	79 bp downstream
Tssr77038	transcription start site region 77038	1420 bp upstream