rs46973956 SNP Detail

Summary

• ID
  rs46973956
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72212952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTGTGAT AACTATTTGA
  TACTCATTTA CAGTGGAGAG CAAGTAAATT TACTATATAC AATTTGGCTA TTTTAGTTTG
  AAAGATGAAT GACTTGAAGC TCAAAAGTGA CTTGCCCCAG GTTAAATGGT TAAATAAGTG
  TAGGTCATCC TAATTCTGTT ATAGTACCTA CTTTACTCTT ATTGTTGCAT TGAACAAACC
  R
  TTCTCAGGTA GTTCATTTTT AGATTATTTT GAACTTGCAT AAGGCATCAA AAATTGTCTA
  TTTGAAAAGC TAGTTACTTG GTGACTACTG AGCTGCCTTT ATGACACTCT GTGGGTGAGT
  TTAAGTTGCC TTTGGAGATG TGTTTAACAG GATTAGCTTT ATTATAGTTT TGTTAAAGAG
  CTTTTTTTTT TTTTTTTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61419733	NES16806323	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46973956					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61419733	NES16806323	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72212952 () rs orientation: forward

Symbol	Name	Function Class
Tssr85977	transcription start site region 85977	200 bp upstream
Tssr85978	transcription start site region 85978	999 bp upstream
Zfp280d	zinc finger protein 280D	within coordinates