rs46975842 SNP Detail

Summary

• ID
  rs46975842
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:61177616 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATTTTCC AGTCTGGTGC
  TGTGTCCTTG CCTGACCAGC CACCAGGAGG CAGCACTCCA CTGGCGATGC ACCCAAAGAG
  AGCCAAGCAA AAGGCAACAG CCCTGACAAC TATCACAGCA ACATCCACAG GCCACACATG
  CCAGGCAGAC CCTGCCCACA GATACACCAG CAAGTCCCGG AAAGGCAAAC CACACAGACA
  R
  CCGCATCTGT CACAGACCTA CAGCTGCCAC ACGGATACCA CCTCAGTCAC ACAGGGTTTT
  CTCCATGATC ACCCCACCCC CCTCCGTGGA TGTAACATTT ACATGCAGCC CACAAACGCA
  AGGCAAATGC CACGAACCCC AATGGGAACT ACGCCCCACA CCACCATGAC ACCGTGTATC
  ATATATTTCT CCAACAGCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52341827	NES15289108	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46975842					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52341827	NES15289108	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:61177616 () rs orientation: forward

Symbol	Name	Function Class
Pald1	phosphatase domain containing, paladin 1	within coordinates
Rr215532	regulatory region 215532	within coordinates
Rr215533	regulatory region 215533	1785 bp proximal
Rr223113	regulatory region 223113	1178 bp distal
Rr228160	regulatory region 228160	within coordinates
Rr228161	regulatory region 228161	1995 bp proximal