rs46976652 SNP Detail

Summary

• ID
  rs46976652
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:33035544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCGTACAA ATCAAAATAA
  GCCTGCCTGG GCCAGGACTG TAACAACAGA AATAAAATGT ATCTGAAAAA GGAAATTTAT
  GTCAAGTTGT ATGGCTGAAA GACATAGTTG GGTTTTTCTT GTTTTGTTTT GTTTTTAAAG
  TTTACAGAAG CTCTTTAAAA CAATCTTATC ACTTGAATGG AATACATATC CCTGTTGCCC
  W
  GCCTATCACT CTACCCTATC TGATATTGTA TCTAAATCTC TATGCTGTGC CCAAACTCAT
  ACAGTTTGTG TCACTGGCCT GTCTGTGATG AAACATGAGG AGAAAGACTT AATGCATTGT
  TCTAAACAGT TTTTTCATCT GAAATTTACT TTCCTTTTTT TTTTTTTTTT TTTAAGTTTT
  CAACATTCTA AGCCTTTTAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60876115	NES15978871	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46976652					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60876115	NES15978871	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:33035544 () rs orientation: forward

Symbol	Name	Function Class
Chchd3	coiled-coil-helix-coiled-coil-helix domain containing 3	within coordinates
Cpgi17277	CpG island 17277	1145 bp proximal
Rr146107	regulatory region 146107	within coordinates
Rr399607	regulatory region 399607	1625 bp upstream
Tssr60218	transcription start site region 60218	1563 bp downstream
Tssr60219	transcription start site region 60219	1647 bp downstream