rs46978415 SNP Detail

Summary

• ID
  rs46978415
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34353036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACAAGAAGT CAGGCATGTA TAAGACACAG GGAGGTCTTG
  TGGCAAGTCA ACTTTCCATG TACAAAGGCA GTCAGGAGTT AATGCATTTG AGCTGTCGAG
  A
  GGAGGTTCAG CAGGCTGGAG GGACTACTCT GAGTTCTGCC CAGTCTCATA CCCTGGCCTG
  GAGGCTCTTT CAACATGGCC TCTACCATTC TAGCACCGT                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss146937833	ENSMUSSNP6224477	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs46978415					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34353036 () rs orientation: forward

Symbol	Name	Function Class
Apc	APC, WNT signaling pathway regulator	941 bp upstream
Cpgi9813	CpG island 9813	494 bp proximal
Rr370354	regulatory region 370354	809 bp upstream
Rr535610	regulatory region 535610	511 bp proximal
Rr535611	regulatory region 535611	934 bp proximal
Rr535612	regulatory region 535612	1012 bp proximal
Rr535613	regulatory region 535613	1365 bp proximal
Rr535614	regulatory region 535614	1674 bp proximal
Tssr150444	transcription start site region 150444	907 bp upstream
Tssr150445	transcription start site region 150445	971 bp upstream
Tssr150446	transcription start site region 150446	995 bp upstream
Tssr150447	transcription start site region 150447	1125 bp upstream
Tssr152786	transcription start site region 152786	1650 bp downstream