rs46978421 SNP Detail

Summary

• ID
  rs46978421
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:97939078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTAAATGT AAGCTCTATC
  ATTGGAAAGC TCCAACCTGG AACTTCAAAA TAACAAAAAT TAGTTCCCAA GCTTGCCTTG
  TCCAATACGG AAGAAAGATA AAGATGGGGA ATGGACAGCA GCTATTTAAG CACAGTCAGC
  TCTACTGTTT GATCATAATC AGCACATGCA TGTTTACTCA TGTTTCACTT AGTAAAGGTA
  R
  TAGTAATGCC ATGCATCTAT TTTATAAGTA GTCCCTGTAT AGCTAAATAC CCAACTATGC
  ATACTCTCCC TAAAGATCTG ATACAATGCA TTATGTGTCA ATTTATCTAC TTGTCAGTAT
  AATGTATTCC TTATCTAATT CATTCGACTT TGTGGAATTC TTACAGGGAA GAGGAATTAC
  ATTTTTCATG ATATTGTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61683905	NES17636582	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G		G	G	G
ss137982493	ENSMUSSNP574562	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46978421					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61683905	NES17636582	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:97939078 () rs orientation: forward

Symbol	Name	Function Class
Rr258643	regulatory region 258643	1323 bp proximal
Rr269010	regulatory region 269010	1088 bp proximal