rs46978635 SNP Detail

Summary

• ID
  rs46978635
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29579839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAACAGGACT GGGTAGAAGT ATCTGAGAGG TAAAGGTCAG
  ATGCCAAGAG GGCCGGGCAG TACTTCACAG GCTCCTCCCA CAGCAAGGAG AGTTTGACAG
  A
  CTCCTCCCAC AGTAGGGAGT GCTGGCCTCT CTTCCAAGCT ACTGGGACCA CTTCCTCTTT
  TTTCACTCTG AAGATAGGAA CTGCCCCAAG GCAGTCAGA                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145431546	ENSMUSSNP6574158	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46978635					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29579839 () rs orientation: forward

Symbol	Name	Function Class
Fgd2	FYVE, RhoGEF and PH domain containing 2	39 bp upstream
Rr405148	regulatory region 405148	within coordinates
Rr524885	regulatory region 524885	within coordinates
Rr524886	regulatory region 524886	257 bp proximal
Rr524887	regulatory region 524887	755 bp proximal
Tssr143531	transcription start site region 143531	44 bp upstream
Tssr143532	transcription start site region 143532	58 bp upstream
Tssr143533	transcription start site region 143533	91 bp upstream
Tssr143534	transcription start site region 143534	104 bp upstream