rs46980283 SNP Detail

Summary

• ID
  rs46980283
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:101267425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCCAGCCTC TTCAAAAACC TGGGAACCCT CTTGGGGTTG
  GGGCTGGCCC TCAACTCCAG CATGTACCGG AAGAGCTGCA AGGGAGAACT CAGCAAGTTG
  Y
  TCCCATTCCG CTTCGCCTGC ATTGTGGCTT CCTTGGTCCT CCTGCATCTC TTTGACTCTC
  TGAAGCCCCC ATCCCAGGTT GAGTTGATCT TCTACATCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132727229	ENSMUSSNP4535877	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46980283					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:101267425 () rs orientation: forward

Symbol	Name	Function Class
G6pc1	glucose-6-phosphatase catalytic subunit 1	within coordinates
Tssr3676	transcription start site region 3676	268 bp downstream
Tssr105098	transcription start site region 105098	1926 bp downstream
Tssr105099	transcription start site region 105099	111 bp downstream
Tssr105100	transcription start site region 105100	24 bp upstream
Tssr105101	transcription start site region 105101	35 bp upstream
Tssr105102	transcription start site region 105102	58 bp upstream
Tssr105103	transcription start site region 105103	573 bp upstream
Tssr105104	transcription start site region 105104	587 bp upstream
Tssr105105	transcription start site region 105105	604 bp upstream
Tssr105106	transcription start site region 105106	622 bp upstream
Tssr105107	transcription start site region 105107	707 bp upstream