rs46980515 SNP Detail

Summary

• ID
  rs46980515
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:76789518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTGTGT GTGCGCATGT
  GTGCCAGCCA TCAGTCAGTT CTCCATTGAA GAGGAAAACA AAAACTATAC ATCTCCCTTA
  TCTTTTACTC CCATTTGTAA AGATTTCTGC AGTCAAACCA AGTCAGGTTT ATTTTCTTGG
  TGCATTTATT CAGGGGGCCC TGTGGATGAC CCACACCCAG AACAAACATC TCTGCTTATA
  Y
  CTGTCTCCTC TTAGAAGACT CTCTTGAAAT TCACATTCTC ATGACCCAAG TTTGGAGCTC
  AACTCATCTT GCCTTCCTTA GGCACAGCCA CACCTTCAGG CTGCTCAAGG GCATGCAGAC
  CCAGATACTC TTACATCGAG TTGGTACCTA GGGAAGGTGA CTGCTCGACC CTCAAATGAA
  AAAGCACATC TGATTTGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss144717318	ENSMUSSNP3097091	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46980515					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:76789518 () rs orientation: forward

Symbol	Name	Function Class
Gm70762	predicted gene, 70762	1715 bp upstream