rs46981043 SNP Detail

Summary

• ID
  rs46981043
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:88189320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A ATGGTAAACA GTGGCCTGGT CCCCCACCAT CTTTTGATGT
  ATACATTCCT TTTGTTTTGT GTCACTGTAA CTCGCCTGGT TTCTTGTTAT TCTTCTGTAT
  W
  AAAAGTTTGA TGATTTGACA AATTACACTC AGATTCAACA CGCTCTCTCG TGTCGTCTCT
  GTTTGTCACC CACTTTCACC AACTCCTTCG CCCACCTGCA A                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss135470190	ENSMUSSNP3748213	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs46981043					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88189320 () rs orientation: forward

Symbol	Name	Function Class
Gm38392	predicted gene, 38392	Intron
Rr375311	regulatory region 375311	within coordinates
Rr579701	regulatory region 579701	563 bp distal
Tsacc	TSSK6 activating co-chaperone	744 bp downstream
Tssr931	transcription start site region 931	24 bp upstream
Tssr33995	transcription start site region 33995	727 bp upstream