rs46982162 SNP Detail

Summary

• ID
  rs46982162
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78522199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAGTTTA AGTCCTCAGG
  GACTGAATGT GCCTATTTTC CAAGTCTTTG GCAGTTCCCG GCTTTTATGG GGTAGTCATG
  GTGAAACCGA GTCATCTGAA GACAGGGGTG GTGCCAAGTA GGGTGTGGGG GAGGCAGCTT
  CAGAAAACCT GGGTTCAGAA AAGCAGTGAT CAGTAATTGC TGGGCACCAA CGAACGCTGG
  Y
  CACCTTCATT CCCAGCGCCA CACTTCTCTC GGGACCCTAT GTTCTGACAA ATTGTTACAA
  ACTCAGGATT CTAATGAGTA CTTTCGGCAG AAAAATGTGC TTAGCGATGA TTACAAGGAC
  CCAACCATTT TCCCAAGCAG TTGCTTCTGA GTTCCAAGTG GCATCACGTA ACTTTTTACT
  TGTGCCAGAC CCCCCCCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
ss61426862	NES16809507	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ
rs46982162					SNP	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61426862	NES16809507	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78522199 () rs orientation: forward

Symbol	Name	Function Class
Cd109	CD109 antigen	629 bp upstream
Cpgi22073	CpG island 22073	578 bp proximal
Gm69315	predicted gene, 69315	within coordinates
Rr683597	regulatory region 683597	321 bp distal
Rr683598	regulatory region 683598	366 bp proximal
Rr683599	regulatory region 683599	727 bp proximal
Tssr86295	transcription start site region 86295	535 bp upstream
Tssr86296	transcription start site region 86296	565 bp upstream
Tssr86297	transcription start site region 86297	584 bp upstream
Tssr86298	transcription start site region 86298	821 bp upstream
Tssr86299	transcription start site region 86299	840 bp upstream
Tssr86300	transcription start site region 86300	887 bp upstream
Tssr86301	transcription start site region 86301	904 bp upstream
Tssr86302	transcription start site region 86302	920 bp upstream
Tssr90659	transcription start site region 90659	728 bp downstream