rs46982840 SNP Detail

Summary

• ID
  rs46982840
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31350574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGG AAGTCAAAGA TGCGGCTCTG
  R
  CTCTTTTTAA AGCTTGAAAC TATTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60562205	NES16490600	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G	A	A	G	G	G	G		G	G	G	G		A
ss145456889	ENSMUSSNP5956574	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						G
ss325358791	CHEV_17_31268545	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46982840					SNP	G	G	A	A	G	A	A	G	G	G	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60562205	NES16490600	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31350574 () rs orientation: forward

Symbol	Name	Function Class
Rr334776	regulatory region 334776	774 bp distal
Rr341222	regulatory region 341222	1575 bp distal
Rr341223	regulatory region 341223	1628 bp proximal
Tff3	trefoil factor 3, intestinal	1989 bp upstream
Tssr147270	transcription start site region 147270	1981 bp upstream