rs46984278 SNP Detail

Summary

• ID
  rs46984278
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:81350280 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCATGGG GCCAGAGAAA
  CTCCTGAAGT CTTTCCATGG ACTCTAGCGT TCCTGAAGTG ATATGCACTA TCGAACCAGA
  TACTTGTATT GAACTGCAGC CCACTTCCCT AACTTTCACT CAGCCTGGCT TCAGCATCCC
  CTTGGCAGCT GGTCACCCAC ATGTCCAAAG TAGCTGTTGA TAATCACAGG GACTCAACAC
  R
  CTTTCTGCCC TTGCAATGAG TGCAAAGATT ACCCTGTGTG TATGTGCCTA GTGACCATGG
  TCGATACCTT ATTCTGTAAT AGCAAAACCC TGGTGTCATT GTACATAAGT GGGAAGGAAG
  AACAGCCTTC CAACCCTAGA GTTTCAAGCA TTACAGAGAA CGTGAAGCAC AGGCTATGAC
  TCTTCCTTAG TCAGGAGACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss63202841	NES17465529	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A	G	A	A	A	G	A	A	G
ss147603210	ENSMUSSNP3577799	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs46984278					SNP	G	G	A	A	A	G	A	G	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63202841	NES17465529	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:81350280 () rs orientation: forward

Symbol	Name	Function Class
D18Mit127	DNA segment, Chr 18, Massachusetts Institute of Technology 127	543 bp distal
Gm30192	predicted gene, 30192	within coordinates