rs46984630 SNP Detail

Summary

• ID
  rs46984630
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:97794510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAACTGAG GGGGCTGAGG
  CAGGAAGATC ATGAATTTGA GGCTAGCCTG GGCTATGTAA GAAGATCATA TTGCAACACC
  TTACTGCCAT AATTTAGAGA AACATATGTT AGTTAGCCCT ACGAAATGTC TATTGTCAAT
  GACAGTGAGA TAGGTCACCC TCTATGATGA GTGTTTCTTT CCAGATAAAA AGTTCCGCTA
  Y
  TATATAGAGA GCAGGGGAGA AGCTATGAAA TTTTAGAAGC ATGTGTATGT GAATATACAG
  ATTTATTTTT GGTCAAAGTT CACTCACATT TTTAAAACAT AATTACATTT GGGCTAAAGT
  TTCACTATAT ATGTATATGG ATGTCTCTTG CTTCATCCTT TAATTCCAAT AATTTATTAT
  GCATTTCTTA ATAGAAACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	CAST/EiJ	PWD/PhJ	WSB/EiJ
ss60427120	NES15930617	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	CAST/EiJ	PWD/PhJ	WSB/EiJ
rs46984630					SNP	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60427120	NES15930617	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:97794510 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13598	CpG island 13598	981 bp proximal
Pde4dip	phosphodiesterase 4D interacting protein (myomegalin)	within coordinates
Rr581573	regulatory region 581573	1503 bp proximal
Tssr34685	transcription start site region 34685	1434 bp downstream
Tssr34686	transcription start site region 34686	1492 bp downstream
Tssr34687	transcription start site region 34687	1633 bp downstream
Tssr34688	transcription start site region 34688	1717 bp downstream