rs46985058 SNP Detail

Summary

• ID
  rs46985058
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:86932699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCATAGACA GTTTTCAAAG
  TTCCTTCTGT GTGTTGTGAT TTCTTTCCAC ACTGCCCCAG CGCACTTGGA GAGGTCACGA
  TTTCCCTCGC TCTTCTAAGA TCATCTCCCA TCATCATTGC TTACTGTAAA AACTGATAGG
  GTTGGTCTGA GCTCTGACCA GAGCATTTCC CTTGGTTTTT CTATTTATTG AGTTTGCTTT
  T
  TTCTTATGTA AATTAAGATA ATCCCTGTGG AAGTCTGGTG GTGGGGGGGA GGGGATTTGA
  TAAGGCTGGG TTGGGCCTAC CGGGTTGGAA TTTCTTCACT GTTGCTACCC CGGGCTTTGT
  AACCTTGAGC TCTGTTTATA TAATACTTTC CTTCTGCAAA ATGGAATTAT CTCAGCTTGA
  TGGGTTGTTG GAGACTTCAT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss137928821	ENSMUSSNP6401636	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs46985058					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:86932699 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4926	CpG island 4926	801 bp distal
Gm60793	predicted gene, 60793	835 bp downstream
Irf2bpl	interferon regulatory factor 2 binding protein-like	1127 bp upstream
Rr387576	regulatory region 387576	65 bp downstream
Rr470235	regulatory region 470235	1529 bp distal
Rr470236	regulatory region 470236	637 bp distal
Rr470237	regulatory region 470237	1670 bp proximal
Tssr3903	transcription start site region 3903	1844 bp upstream
Tssr117130	transcription start site region 117130	1998 bp upstream
Tssr117131	transcription start site region 117131	1891 bp upstream
Tssr117132	transcription start site region 117132	1512 bp upstream
Tssr117133	transcription start site region 117133	1450 bp upstream
Tssr117134	transcription start site region 117134	1211 bp upstream
Tssr117135	transcription start site region 117135	1175 bp upstream
Tssr117136	transcription start site region 117136	1119 bp upstream
Tssr117137	transcription start site region 117137	1083 bp upstream
Tssr117138	transcription start site region 117138	1067 bp upstream
Tssr117139	transcription start site region 117139	39 bp upstream