rs46985388 SNP Detail

Summary

• ID
  rs46985388
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:69285325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGGAAAT AGCAAGTCCC
  TTCTGCCCAC GCCTGAGGGC TGTTATTACA GAGAGGGCCT GATGCAGACA GGAGCTATTG
  AGGACACTTC CCAGAGACAG TGACTGTTCT GAAACCCTGG GCAGCTTGCC CATGTGCAGT
  GCAGCAGAGT TTACAAGCAC CTCCGCAGGT CACTGCTGTT ACCTTCAGCT GCTAGATGCT
  M
  GTTTGCTGAG GCCCTGCATG GCTTGCCTGT AGAACTTACT CGTACAGTCC AGTGAGATGG
  CTAAAGAGGC TCAAGGCACT AACAAGATGA TCTGAGTTTG ACCCTCAGAA CCCACAGGGT
  GGCAAGAGAG AACTGATCCC CAAAGTTGCC CTCTGACCTA CACATACACA CACCATATAC
  ATATATGTGT GTGTGTGTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss136600610	ENSMUSSNP5496045	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss322998170	CHEV_9_69225850	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46985388					SNP	C	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:69285325 () rs orientation: forward

Symbol	Name	Function Class
Rora	RAR-related orphan receptor alpha	within coordinates
Rr682167	regulatory region 682167	859 bp distal