rs46986045 SNP Detail

Summary

• ID
  rs46986045
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170825274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGTTTTAG CCTTTATGGT
  CATCTAGAAT TAAGGATTCC TTAGTGCTTA GTACTGGCCA ACATTATAGC CCTCAGCCTG
  AGGTCTGGAA ACCCAGTCCC TCTAGACTCT GCTGCATTAA GTAGAGTCTT TGAGTTCTGG
  AAGAGAGCAT CACTAGGTGG CTTCCTACAG CAAAATGACA GAAAACAGAA AACAGCTTAC
  R
  TAGACCCCCC CCCAAAAAAA TGGCTTTACC ATGTGGCATA CCAAGTTTCT TAAACATGTA
  ACTATAAATT ATAGATAACG TGTAATAATA TTGTTGCTGG TGGTGAAACC TTTACCCAGT
  GTTTCTAGTC TCTCGTCATC ATCAGAAAAC CTTTTTCTTT TAATGAGGCA AAGTAAGGAA
  TTAGGAGGAA GTTGATTTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146150313	ENSMUSSNP3683706	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss320115468	CHEV_1_172927836	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46986045					SNP	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170825274 () rs orientation: forward

Symbol	Name	Function Class
D1Dcr17	DNA Segment, Chr 1, Derry C. Roopenian 17	1979 bp distal
D1Mit146	DNA segment, Chr 1, Massachusetts Institute of Technology 146	1968 bp distal
Rr396544	regulatory region 396544	within coordinates
Rr396545	regulatory region 396545	726 bp upstream
Rr423178	regulatory region 423178	649 bp distal
Rr423179	regulatory region 423179	732 bp distal
Rr423180	regulatory region 423180	126 bp proximal
Tssr9941	transcription start site region 9941	860 bp upstream