rs46987143 SNP Detail

Summary

• ID
  rs46987143
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:74789277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCATCTCAC CAGCCCAGGT
  GTGGAGTCTC TTAATAAACT TACATAGCAG AGTCCAGAGG AAGAACCCAA AAGAGCCCAG
  GTTTCCGAGC CAAACTATAA TATATGGTTA AACCATGAGT CTTTGTCACC TTAAAGGTGA
  TTCCTGTAAG GACTCAGCAA GAAAGGAGAC AGAGATCATG GCATGGCCAT GGTTGCATGG
  Y
  TGGGAAATGT CAGCCAATCC TCTGAGGAGC TGCAGAGTGA AGGGGGACGC GGCTGGGAAC
  TGGAGGAGCC ACTGCCCTCA TTAGAACGTG GAGAAGAGCT TGGTCTAACT CTGTTCCTAT
  CCCAATATTT TTAGAACTTG CAAGTGAAGA ATTAGATATT CAGCTGAAGG CATAACTGAG
  CACTGTGTGG CAGGCATGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss52570517	NES15642378	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs46987143					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52570517	NES15642378	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:74789277 () rs orientation: forward

Symbol	Name	Function Class
D15Mit28	DNA segment, Chr 15, Massachusetts Institute of Technology 28	1911 bp distal
Gm62792	predicted gene, 62792	within coordinates
Rr504378	regulatory region 504378	396 bp proximal
Tssr131597	transcription start site region 131597	1277 bp upstream
Tssr131598	transcription start site region 131598	1325 bp upstream