rs46988766 SNP Detail

Summary

• ID
  rs46988766
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127583325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTGTCAC CACTCAGCAC
  TAGGTGTTGG GCGAAGAAAG GTTGGTTAGC CGGAAGTGAC AGGTGAGGAG GCTTCTGGAC
  GGCTTGTGCG CAGGGTGGCA GCATCCCGAG GAAGGTTCCA ATCCTGTCTG GCTGGACTCT
  CATCCGCTCC CCACGCCTCG GGTTGAGCAG AGAGTAGCCA CTGCCTCCCA AGGCCCGAGA
  K
  CAGGCGCACA TTCTTAGGGT CCCCAACGAG TCCTCCAACT GCCTGCTGGT CCACCACCCC
  ACAGCAGCTC TTAATCTGGA ACCGACCCAG TTCCTTTCTT CTCAAAGCCC AGCTCCCGGG
  TCACATGCCA TCTAGAGCTG CCTCTTGTTG GAGAAGGTGC GGTCGCCCCG GGTGCCCGGC
  GACTCAAACC CGGTCAGTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135871347	ENSMUSSNP474557	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46988766					SNP	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127583325 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13800	CpG island 13800	within coordinates
Cpgi13801	CpG island 13801	962 bp proximal
Gm56817	predicted gene, 56817	within coordinates
Gm65064	predicted gene, 65064	1883 bp downstream
Gm65225	predicted gene, 65225	717 bp downstream
Rr584859	regulatory region 584859	1362 bp distal
Rr584860	regulatory region 584860	within coordinates
Rr584861	regulatory region 584861	122 bp proximal
Rr584862	regulatory region 584862	247 bp proximal
Rr584863	regulatory region 584863	571 bp proximal
Rr584864	regulatory region 584864	1139 bp proximal
Tifa	TRAF-interacting protein with forkhead-associated domain	within coordinates
Tssr31594	transcription start site region 31594	474 bp downstream
Tssr31595	transcription start site region 31595	462 bp downstream
Tssr31596	transcription start site region 31596	429 bp downstream
Tssr31597	transcription start site region 31597	389 bp downstream
Tssr31598	transcription start site region 31598	366 bp downstream
Tssr31599	transcription start site region 31599	126 bp upstream
Tssr31600	transcription start site region 31600	190 bp upstream
Tssr31601	transcription start site region 31601	224 bp upstream
Tssr31602	transcription start site region 31602	265 bp upstream
Tssr31603	transcription start site region 31603	310 bp upstream
Tssr31604	transcription start site region 31604	427 bp upstream
Tssr31605	transcription start site region 31605	926 bp upstream
Tssr31606	transcription start site region 31606	1124 bp upstream
Tssr31607	transcription start site region 31607	1362 bp upstream
Tssr31608	transcription start site region 31608	1430 bp upstream
Tssr31609	transcription start site region 31609	1481 bp upstream
Tssr31610	transcription start site region 31610	1590 bp upstream
Tssr31611	transcription start site region 31611	1698 bp upstream
Tssr35598	transcription start site region 35598	66 bp downstream
Tssr35599	transcription start site region 35599	150 bp downstream
Tssr35600	transcription start site region 35600	167 bp downstream
Tssr35601	transcription start site region 35601	193 bp downstream
Tssr35602	transcription start site region 35602	525 bp downstream