rs46988987 SNP Detail

Summary

• ID
  rs46988987
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:64643295 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAACACAC AGGACACAAA
  GAAGTCCCGA GAGGAAAGTT GATGGTGATA CATGCCAATA ATGAGAAAAA AGAAAGATCT
  CAAATAAACG ACCTGATTCT ATATCTCAAG GAACTAGAGA GAGAGAGAAC AGGAAGAAAA
  TCAATACGAG ATCTAGTAGG ATAATATACA TAGGACACGC CAGAGCATAA ATAGATGAAG
  M
  AGCAGTTCGA GAATCAACAT GTTGTGGTGG AGCATCAGTT ATTCCATGAA CATCACAGAG
  TAGAAACAGC GGTGGTCCAG TAGCCATGGC AACAAAACAA GCAGAAGAAC ACAACAACAG
  CTAGGTGTGT AGTAACAGTA AGGAAGTTAT TGACAAGATG CTGATGGAAA GTATACTCAG
  AGTACCCTTG CTTGGGATTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61173199	NES16687566	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46988987					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61173199	NES16687566	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:64643295 () rs orientation: forward

Symbol	Name	Function Class
C030018K13Rik	RIKEN cDNA C030018K13 gene	1985 bp downstream
Gm57288	predicted gene, 57288	1906 bp upstream
Rr122953	regulatory region 122953	within coordinates
Rr131555	regulatory region 131555	1197 bp proximal
Rr367844	regulatory region 367844	1863 bp upstream
Tssr46401	transcription start site region 46401	1900 bp upstream