rs46989266 SNP Detail

Summary

• ID
  rs46989266
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52474966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAATTCACA AGACATTTTC
  TCAGTAAAAC ATTGCAACAT TGTGTCTAAA GGGATGCTTA GAAACATTGG GATGCTTAGA
  CAAGTCCTAT ACCTGTCTGA AGCCCTCGCG CTTCTCCTCA GAGAGTACCA CCATGGCTAG
  CACAGGAATG CTTTTCCACA CCCCAGCCTA GCATTTATAC ATCCGCATGG ACCTATAAAG
  K
  GTGTGTGGTG TGCCTTGTTA TTTTGGGTGG GTGTCTATGA CATAAATAGC AACAACTCTA
  CTTATCTTTC TGTAACTTCC TTCTCTTCCC CCAAGAATCT GTCTTAGCAA TCTGCCCCTC
  CACACACAGT CCAAATACCA CCACTAATTC TCTAGACTGT ACACGTTCTC ATTTATGGTA
  TGTGGCTTCC TCCTCCTGTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60408997	NES15911293	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46989266					SNP	G	G	G	G	G	G	T	G	G	G	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60408997	NES15911293	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52474966 () rs orientation: forward

Symbol	Name	Function Class
D3Mit364	DNA Segment, Chr 3, Massachusetts Institute of Technology-364	1186 bp distal
Rr576544	regulatory region 576544	within coordinates
Rr576545	regulatory region 576545	1106 bp proximal