rs46990957 SNP Detail

Summary

• ID
  rs46990957
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66589786 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TTCAACTCTG AATTCTTAAA AAAAAAAATG TCATCCATCA
  ATGGCCTGTT TTGACCCTCT CTAAAGTCTA CTCGAATCAA ATTCCTTCCT TTTTTTTTTT
  C
  CTTTTTTTTT TCTTTAATTA GAATTTGTAA TTCCGGTAAA GATAAAGATT TTGTACAAAG
  GTTTGTGTCC TGGATGGATC AAAGATCTTT TACAATGAAA A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147332498	ENSMUSSNP246762	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs46990957					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66589786 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10160	CpG island 10160	1479 bp proximal
Pmaip1	phorbol-12-myristate-13-acetate-induced protein 1	1889 bp upstream
Rr405709	regulatory region 405709	1704 bp upstream
Rr539737	regulatory region 539737	1328 bp proximal
Rr539738	regulatory region 539738	1676 bp proximal
Rr539739	regulatory region 539739	1730 bp proximal
Rr539740	regulatory region 539740	1889 bp proximal
Tssr151705	transcription start site region 151705	1872 bp upstream