rs46990972 SNP Detail

Summary

• ID
  rs46990972
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112794310 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCATTCACA CTCTCAATTC
  CTATGTGGTC CTAAGCCTGT CTCCCCAACA CTGCTCACCT GTCTAGGTAT CTTAGCTGAA
  GGTCAGGTCC AGGCTCTAAC ATAAGTCTCT GATCCTGGAA GGTTCAGGAT CCTAGGGAGA
  CTCTCCAGCT GCAGGGCAAA TCAGGGTGGC TTCTCTCCAG ATGTGCAGGA CAGAGCATTG
  Y
  TCTTGGTCTC TGCTTACATA CTGTCCAGTA GATATGGGGT ACTAGGACTG TGTCTGACTA
  TCTTGAGTGA GCGATGTCAC TGGGTTCTGG TTGCCAGGTG CAGCCTTGGG TGTAGTGGGG
  TTCCTGACTA CGCTATTTTT ACATGTGGGT CCTAGGGATC TTAGGTTCGA GGCTTGGTGC
  TAAACTCCTG CTGAACCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss138728320	ENSMUSSNP5050026	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss324171485	CHEV_12_114068901	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46990972					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112794310 () rs orientation: forward

Symbol	Name	Function Class
Cdca4	cell division cycle associated 4	1267 bp upstream
Cpgi5185	CpG island 5185	531 bp distal
Gm52009	predicted gene, 52009	414 bp downstream
Gm56552	predicted gene, 56552	within coordinates
Rr265126	regulatory region 265126	within coordinates
Rr387795	regulatory region 387795	362 bp downstream
Tssr3960	transcription start site region 3960	1211 bp upstream
Tssr115439	transcription start site region 115439	1529 bp downstream
Tssr115440	transcription start site region 115440	1005 bp downstream
Tssr115441	transcription start site region 115441	328 bp upstream
Tssr117911	transcription start site region 117911	1584 bp upstream
Tssr117912	transcription start site region 117912	1264 bp upstream
Tssr117913	transcription start site region 117913	1186 bp upstream