rs46992890 SNP Detail

Summary

• ID
  rs46992890
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:30388261 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATGGCTA AGCCTGCCTT
  TGAATGGATC CAATCCATTA TTGTAAGGGG TGCCCTTCTG ACCATAGGGT GGTTGGCAGT
  GACCAAGTAT AAAGTTCTGT GTGCCTTGTA AAATATCCAG ATTTGTTTTG CAAAGAGACA
  GTATTTATTC TCTACATGAA GTGCGTTTGC GATAGAAGCC ACAAAGCCAA TGCTGGTAGC
  Y
  TCCTTGCTTT CTGACGAGTC CCCAGTTACC AGGATATGAG ATGAGCATAA GTTCACCAAT
  AAATATGATA TCCGTAACTA GGGTATGTAG CGGTTCCCAA TTAAATCTAC TTAAGTATGT
  GGCGGCTATG CTCTCTGCCC CACACCTTCT CAGGCACAGT GGCTCTCTTC CTCCTCCTGG
  CATGGTGGAC CTCCTCCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss145440465	ENSMUSSNP4268703	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs46992890					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:30388261 () rs orientation: forward

Symbol	Name	Function Class
Rr341157	regulatory region 341157	861 bp distal
Tssr143615	transcription start site region 143615	551 bp upstream
Zfand3	zinc finger, AN1-type domain 3	within coordinates