rs46994385 SNP Detail

Summary

• ID
  rs46994385
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:51361236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATCCGTTA ATCTTAGCAG
  CTGCCAGGTG GAGAAAGAGA AAAGGAAGAA ACAAAATTAG GGGGAAATCA CATTGTTTGA
  GTAGAGCTAG GATGAAGAGA AACTATGTGA TAGGAAGAAC CAACAAAGCA GGGAGATGAG
  ATTTAAAGAA AGAGTGAGGA ATCACAAAGT GTTGAGGAAA AGTGTGTTTT AAACAGATAT
  R
  AAAAAATAAC TAAAGTTACG AAATAACTCA GAATAGTAGG CGTATTCACA AAGCTGTGTG
  GCTGCATCCC TACAGGTGAC AGCTGAGATC ATCTCTTCCC TCTGGCTCTT CATAGGACTG
  TGAACAAAGC AAAGAACAGA ACTCCTCACC CACTCCAAGC TCACCTCAAG GCTAGAAAAT
  GAGATGTGTA TGACTGAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss52289013	NES15304951	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs46994385					SNP	G	G	G	G	G	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52289013	NES15304951	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51361236 () rs orientation: forward

Symbol	Name	Function Class
Gm49339	predicted gene, 49339	within coordinates
Lilrb4b	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	within coordinates
Tssr93245	transcription start site region 93245	1720 bp downstream
Tssr93246	transcription start site region 93246	1535 bp downstream
Tssr93247	transcription start site region 93247	1492 bp downstream
Tssr93248	transcription start site region 93248	1451 bp downstream
Tssr93249	transcription start site region 93249	1285 bp downstream
Tssr93250	transcription start site region 93250	824 bp downstream
Tssr93251	transcription start site region 93251	763 bp downstream
Tssr93252	transcription start site region 93252	668 bp downstream
Tssr93253	transcription start site region 93253	472 bp downstream
Tssr93254	transcription start site region 93254	339 bp downstream
Tssr93255	transcription start site region 93255	121 bp downstream
Tssr93256	transcription start site region 93256	18 bp downstream
Tssr93257	transcription start site region 93257	335 bp upstream
Tssr93258	transcription start site region 93258	570 bp upstream
Tssr93259	transcription start site region 93259	612 bp upstream
Tssr97554	transcription start site region 97554	609 bp downstream
Tssr97555	transcription start site region 97555	1171 bp downstream