rs46995018 SNP Detail

Summary

• ID
  rs46995018
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134945307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGAAGAG GGCATCAGAT
  CCCAATACAG ATGGTTGTGA GCCACCATGT GGTTGCTGGG AATTGAACTC AAGACCTCTG
  GAAGAGCAGT CAGTGCTCTT AACCACTGAG CCATCTCTCC ACCCCAACAC ACCAGCTTCT
  AAAACCATCT TTTCTTGTCT CAGATCTTTA CATGCAACAA ATGCCCATTA GTATTGCATT
  W
  AGCTTGGTTT GTCACAGAAT TAACATTGTG GCCTTGAAAG GTCACCACAC AGAATTAGAC
  AGTGTCAGCC CAGTTCACAA TTATCTATTG TCTACTATTA TAATTATTAT TATTATATTA
  TATATAATAT AGTATATAAT ATGATATAAT ATAAAATGTA ATATATAATA TAATATATTA
  TTATTATATT TATCTATTAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147541503	ENSMUSSNP3263431	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	A
ss321351217	CHEV_4_134773911	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46995018					SNP	A	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134945307 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	within coordinates
Rr86243	regulatory region 86243	107 bp distal
Rr86244	regulatory region 86244	1494 bp proximal
Tssr43955	transcription start site region 43955	1600 bp upstream
Tssr43956	transcription start site region 43956	1569 bp upstream
Tssr43957	transcription start site region 43957	1319 bp upstream
Tssr43958	transcription start site region 43958	1183 bp upstream
Tssr43959	transcription start site region 43959	1162 bp upstream
Tssr43960	transcription start site region 43960	1010 bp upstream
Tssr43961	transcription start site region 43961	951 bp upstream
Tssr43962	transcription start site region 43962	905 bp upstream
Tssr43963	transcription start site region 43963	846 bp upstream
Tssr43964	transcription start site region 43964	734 bp upstream
Tssr43965	transcription start site region 43965	616 bp downstream