rs46995048 SNP Detail

Summary

• ID
  rs46995048
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86348612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACTC ATAATTGCTT GCAACTTCAG
  R
  GCATCTGACC TCTTTTTCTG GGCTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136756099	ENSMUSSNP1089212	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss323056346	CHEV_9_86360166	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46995048					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86348612 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22101	CpG island 22101	1442 bp distal
Cpgi22102	CpG island 22102	358 bp proximal
Dop1a	DOP1 leucine zipper like protein A	582 bp upstream
Rr684095	regulatory region 684095	1620 bp distal
Rr684096	regulatory region 684096	1119 bp distal
Rr684097	regulatory region 684097	1580 bp distal
Rr684098	regulatory region 684098	105 bp proximal
Rr684099	regulatory region 684099	522 bp proximal
Rr684100	regulatory region 684100	606 bp proximal
Tssr2956	transcription start site region 2956	1400 bp upstream
Tssr86391	transcription start site region 86391	604 bp upstream
Tssr86392	transcription start site region 86392	614 bp upstream
Tssr86393	transcription start site region 86393	665 bp upstream
Tssr90780	transcription start site region 90780	1616 bp upstream
Tssr90781	transcription start site region 90781	1601 bp upstream
Ube3d	ubiquitin protein ligase E3D	1609 bp upstream