rs46995699 SNP Detail

Summary

• ID
  rs46995699
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84468385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGG AGTTCAACTC ATCCTCCGTT
  Y
  TGTCGCTTTT GAAGCCTGCC CGCGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145361170	ENSMUSSNP1274291	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46995699					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84468385 () rs orientation: forward

Symbol	Name	Function Class
Adgre5	adhesion G protein-coupled receptor E5	573 bp upstream
Cpgi20655	CpG island 20655	66 bp distal
Gm46046	predicted gene, 46046	within coordinates
Rr368559	regulatory region 368559	1618 bp downstream
Rr666301	regulatory region 666301	496 bp distal
Rr666302	regulatory region 666302	387 bp distal
Rr666303	regulatory region 666303	within coordinates
Rr666304	regulatory region 666304	460 bp proximal
Tssr2618	transcription start site region 2618	1643 bp upstream
Tssr2619	transcription start site region 2619	1355 bp downstream
Tssr2620	transcription start site region 2620	459 bp downstream
Tssr2621	transcription start site region 2621	799 bp upstream
Tssr78291	transcription start site region 78291	1400 bp downstream
Tssr78292	transcription start site region 78292	1378 bp downstream
Tssr78293	transcription start site region 78293	1237 bp downstream
Tssr78294	transcription start site region 78294	1182 bp downstream
Tssr78295	transcription start site region 78295	1136 bp downstream
Tssr78296	transcription start site region 78296	1117 bp downstream
Tssr78297	transcription start site region 78297	322 bp downstream
Tssr82049	transcription start site region 82049	1686 bp upstream
Tssr82050	transcription start site region 82050	1598 bp upstream
Tssr82051	transcription start site region 82051	1324 bp upstream
Tssr82052	transcription start site region 82052	566 bp upstream