rs46997612 SNP Detail

Summary

• ID
  rs46997612
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81338857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGGAGGT ATGTCCTCGC
  CACGACCGCG TCGCGCTTGG GGTTCCCTGT CCCGCGTCAC AGCAGGTTGA TCTCGTCCAG
  GTACCGGGCC AGCACCGAGT CCCGCACGTC CTTGAACACG CTGCGGACGC TTTGCGTGTC
  CGTGGCACAG GTGAAGTGTG CGAAGAAGCG GCGCGCGCGG GAGCCTTTCC TGCCACCGTC
  Y
  TGGGGCTCTG CGCAGCTCGC GTACACGCGC GCATACATGT CCAAGATGAA GCTCTTGGCG
  GCCTCTGCGT CTCGCCGGGG TCCTGCAGAG AGGGAGAGGG GTTGAGTGGG CTCCCTTTTA
  TAGCCCAGGC TGGCCGCAAA CTCCCTACAT AGCCCGGGAT TACCCTGGTT TCCCTAAATA
  GCCCAGGCTG CCCTCCAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61292382	NES16908635	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46997612					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61292382	NES16908635	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81338857 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1995	CpG island 1995	within coordinates
Gm16106	predicted gene 16106	1450 bp upstream
Gm56270	predicted gene, 56270	1599 bp upstream
Gna15	guanine nucleotide binding protein, alpha 15	within coordinates
Rr216883	regulatory region 216883	257 bp distal
Rr216884	regulatory region 216884	144 bp proximal
Rr225303	regulatory region 225303	within coordinates