rs46997773 SNP Detail

Summary

• ID
  rs46997773
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:127399586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGGGTGAA TCAACCTGCA
  GACCGCAGTG CTGCTTTGGA CCAACCACCT AGATACAACA AACATGCCAG ATCTGTCTCA
  CTATGGATGC TAGCCAGAAT TATGTCAAGA TCAGGTTTAC CCTGCTCTCC CTCCCAGAAC
  CATAGCTGGT GCTGGGCCTT CAGCCTACTG GGAGACCCAG CAGGAGGGAC AAACATATCA
  S
  TGATGGGGGC ATCCCTTCCC TACCCTATTA TCCTGAAATA CACTACCAAA TGGGCAGGTT
  CTGTCCTTTG CCTGCCACTG AAGAGTGGAC TGGCCACCAG GGGGCACTCT GGCAAGAAAA
  TTCCCTCCAA ACCCCCTTGC CCGCCCCTAG GGGTGGAGGC TAGGCTGGTC TCCTTCCTGG
  AATGGGTCAG GAGGGAGGAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145882790	ENSMUSSNP6281003	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46997773					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:127399586 () rs orientation: forward

Symbol	Name	Function Class
9430064I24Rik	RIKEN cDNA 9430064I24 gene	within coordinates
Cpgi19768	CpG island 19768	1133 bp distal
Gm49388	predicted gene, 49388	within coordinates
Hsd3b7	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	244 bp upstream
Rr655897	regulatory region 655897	within coordinates
Rr655898	regulatory region 655898	90 bp proximal
Rr655899	regulatory region 655899	1830 bp proximal
Setd1a	SET domain containing 1A	292 bp downstream
Tssr69292	transcription start site region 69292	194 bp upstream
Tssr69293	transcription start site region 69293	209 bp upstream
Tssr69294	transcription start site region 69294	297 bp upstream
Tssr69295	transcription start site region 69295	430 bp upstream