rs46997896 SNP Detail

Summary

• ID
  rs46997896
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:85870627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTCAAACGG GGACTGTCCC AGTCTAGAGA TGCTGGGGTG
  TGCTGATCTT CACAGACACT TACAGCATAT GCCAATCTAC TTCTTTTTAC TTTCTCCTCT
  Y
  AACACCAGCT TGGGTTATTT AAAAATCCCC CCAGCCCGCC CCCGCACACA CTCCCTTTCA
  GTAGAACGTA GAACTTACAC CCTCCATTTA TTTCACAGAT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52451571	NES15428293	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46997896					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52451571	NES15428293	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:85870627 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4904	CpG island 4904	614 bp proximal
Erg28	ergosterol biosynthesis 28	within coordinates
Rr258254	regulatory region 258254	1427 bp distal
Rr265707	regulatory region 265707	826 bp distal
Rr265708	regulatory region 265708	within coordinates
Tssr114435	transcription start site region 114435	780 bp upstream
Tssr114436	transcription start site region 114436	1065 bp upstream
Tssr117107	transcription start site region 117107	643 bp downstream
Tssr117108	transcription start site region 117108	653 bp downstream
Tssr117109	transcription start site region 117109	707 bp downstream
Tssr117110	transcription start site region 117110	992 bp downstream
Ttll5	tubulin tyrosine ligase-like family, member 5	790 bp upstream