rs46997923 SNP Detail

Summary

• ID
  rs46997923
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127293812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGTGGTAC ATGGGACCAT
  GTATAAACAA ACAAACAAAC AAATAAATAA ATAAAATCTA GCAAAATGAC TTTCATGAGA
  CGAGTTGTCC TCTCTCCTGC CATTTATTTT CCATTTCCTA TGAATCTCCA CACGGATATA
  TCTCCAGCTT TAACAAAAGA GAGCCGAGCT CCATGGTCCG TGCCTGGAGT CCCAGCACGG
  K
  TAGACTGAGC CAAGAGCATC CTTGCACAGA GGGACTAGGG GACAAGCTGG TTACCATGAG
  AAGACACAAA TGGTCCTGCA ACCCAGATGG ACAAATCCTC AGAAATATCA CTAATTATTG
  ATGCTCTTGG GTCCCAAATT TGATCATCTG TAGATCTTAT TGATTTTTAC AGTTCAATCA
  TATCTGCATT TTCTCTATTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss61079239	NES16586926	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	T	G	G	T	T	T		T	T	T		T
ss135865128	ENSMUSSNP807247	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss320954698	CHEV_3_127203081	CHEVERUD	SCREENING_POP	f	SNP											T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs46997923					SNP	G	G	T	G	T	G	G	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61079239	NES16586926	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127293812 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	813 bp upstream
Cpgi13791	CpG island 13791	754 bp distal
Rr584800	regulatory region 584800	672 bp distal
Tssr35576	transcription start site region 35576	1125 bp upstream
Tssr35577	transcription start site region 35577	1092 bp upstream
Tssr35578	transcription start site region 35578	1070 bp upstream
Tssr35579	transcription start site region 35579	1026 bp upstream