rs46998312 SNP Detail

Summary

• ID
  rs46998312
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:16889191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGAGTAC CCGTCTCCCT
  CTCCCCTAGG GGCTGGTCCA GTGGGTGTCT GTGTGCATGT GTATGGTGGG GTACAAATAA
  ATAAACACAC ACACACATGT ATATTCACCG TGTGTGTGCC TGGTATCTAG AGAAGCCAGA
  AGAGGGCATC GGATCCCCTA GAGCCGAAGT TATGGATCCT CCACAAGAGC AGCAGGTGCT
  M
  AAGGATGTCA GCCCATCTCT CCAGCCATAC TGTGGGCTCT TAAAAAAGTC AGGGGTGCTG
  TATTTGAAGA GTTTTGCTAC CAGGATCCCT AGGTCTATGT GTTCCTAGCC AAGGGACTAT
  GTGGTTAGCA TGTCTTCTTA GGGATTAGAC CAAAATCTTG ACTTACCACA GATATATAGC
  AGCCCAGGGG CTGGCCCATA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss147879731	ENSMUSSNP614515	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs46998312					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:16889191 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8003	CpG island 8003	832 bp distal
Gm59807	predicted gene, 59807	1287 bp upstream
Rr316811	regulatory region 316811	1791 bp distal
Rr324980	regulatory region 324980	within coordinates
Tssr137265	transcription start site region 137265	1112 bp downstream
Tssr137266	transcription start site region 137266	1088 bp downstream
Tssr137267	transcription start site region 137267	1073 bp downstream
Tssr137268	transcription start site region 137268	1052 bp downstream
Tssr137269	transcription start site region 137269	1007 bp downstream
Tssr137270	transcription start site region 137270	991 bp downstream
Tssr137271	transcription start site region 137271	982 bp downstream
Ypel1	yippee like 1	within coordinates