rs46998656 SNP Detail

Summary

• ID
  rs46998656
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171286438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGC CAAGCTAACC TGGTCTTTCC
  Y
  AACAAAACAA AACAGAAACA AAACC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120001184	PARCsnp_1.02860	PARC_SEQ	INBRED	f	SNP			C	T
ss146163815	ENSMUSSNP6339484	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320119039	CHEV_1_173389001	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs46998656					SNP	T	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171286438 () rs orientation: forward

Symbol	Name	Function Class
F11r	F11 receptor	within coordinates
Rr25638	regulatory region 25638	922 bp distal
Rr31965	regulatory region 31965	764 bp proximal
Tssr10057	transcription start site region 10057	751 bp downstream
Tssr10058	transcription start site region 10058	511 bp downstream