rs46999482 SNP Detail

Summary

• ID
  rs46999482
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:67471621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCGGGGC TGTTTTCCTT
  AACTCCTTCA CCATTTCCCT TCACAGTATA TTTATTTAAA CTGCACTTGA GCCTCATTCG
  TCCACACTCC GCTCTCTCCT TCCTTCATCT CGCCTCTCCT TCTAACACTT GTGGCCTTCG
  CACGAAATGA TTGCTTCCCT GGAACTCTCT GAGACTTGGT AGACCGGTTC AGAAAGACGG
  R
  TGCCCTGAGG GTAGTGTTTG CGAAAAGCAT AAATACAGGT GGTCACAGGT CCAAACCCCG
  GGAATGAATC TGTAGGGTCT CCCGCAGGCG ACAAAAAACC TGCATCTAGA GGCAAATCCG
  CGCTGGCTTC CTGCTCCCGC GATCGGAAAG AACCATCATG ATCCTAACTC TCAGAGTCCT
  GCTACTCTGT TTTGGTGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62435907	NES17250939	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46999482					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62435907	NES17250939	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:67471621 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6657	CpG island 6657	1917 bp distal
Cpgi6658	CpG island 6658	319 bp distal
Cpgi6659	CpG island 6659	9 bp proximal
Cpgi6660	CpG island 6660	728 bp proximal
Ebf2	early B cell factor 2	within coordinates
Gm20675	predicted gene 20675	1043 bp upstream
Rr297418	regulatory region 297418	within coordinates
Tssr126327	transcription start site region 126327	964 bp downstream
Tssr126328	transcription start site region 126328	826 bp downstream
Tssr126329	transcription start site region 126329	716 bp downstream
Tssr126330	transcription start site region 126330	262 bp downstream
Tssr126331	transcription start site region 126331	416 bp upstream
Tssr126332	transcription start site region 126332	448 bp upstream
Tssr126333	transcription start site region 126333	559 bp upstream
Tssr126334	transcription start site region 126334	623 bp upstream
Tssr126335	transcription start site region 126335	673 bp upstream