rs46999788 SNP Detail

Summary

• ID
  rs46999788
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:45863886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGATTTGG GGGGGGAGTG
  TTTAGAACTA AGGATCAAAG CTAAAATACA TTCACCGGGT AAGCAGCATC TATCCCTGAG
  CTACATTCCT AATGGCTGCC TCAGTTCCCT AGCTGTCCTG TCATGACTCC AGCCTGCCTT
  AAGCCCAGCA CATCTTGCTA GTCCTCCAGG GGGACTTAGA GCAGTGAGCA ATCGAGAGGA
  Y
  GCTCTTCTTT TTTAATTAAT TAATTTTATA TCCCAATTGT TGCCTCCCGC CAGGTCCTAC
  CTCCACAGAG TCCTCCCCCA TCCCCTTCTC CTCTGAGAGG GTTAGGCACA TCCTCTCCCA
  CTATTGGGAA ATTGACTCCA CAGACAGACA ACAGCTTTAA GGACAGCCTC TGTTCCAGGT
  GTTGGGGGAT GCACATGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60259850	NES15755812	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46999788					SNP	T	T	T	T	T	T	T	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60259850	NES15755812	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:45863886 () rs orientation: forward

Symbol	Name	Function Class
Rr405301	regulatory region 405301	529 bp downstream
Rr527425	regulatory region 527425	407 bp distal
Rr527426	regulatory region 527426	270 bp distal
Rr527427	regulatory region 527427	1418 bp proximal