rs46999826 SNP Detail

Summary

• ID
  rs46999826
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:53615780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGAATCAT TGTCAGACCC
  AGGAATGGAA ATAAAAAAAC AAACAAACAA ACAAAACCAC CAGGCTGGCC TTGAACTCAG
  AAATCCACCT GCCTCAGCCT CCCGAGTGCT GGGATTAAAG GCGTCTGCCA CCACACCCGG
  CTCACTTTTT TTTTTTTTTT TTTTTTGAGA CCACAGAGAT ATCTGCCTGT CTCTGCCTCC
  S
  GAGTGATGGG ATTAAAGGCT TGTCCTATCA CACTCTGACT AGAAGCCAAA CTTCTGAATG
  TTGAACACTT TACACATGTA GGCTGAACTC TCTTGGAATG GATGCTGGCT GAATGAGGGC
  AAGCCACATT TGTTAAGTTC CTTAACGGAG TTCTTTATTT CACAAGCAAA AGTACTTGTT
  GAGAGATATA AAAATGCTTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss136502091	ENSMUSSNP2408551	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs46999826					SNP	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:53615780 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21758	CpG island 21758	1110 bp proximal
Rab39	RAB39, member RAS oncogene family	within coordinates
Rr401371	regulatory region 401371	1739 bp upstream
Rr679060	regulatory region 679060	1265 bp proximal
Rr679061	regulatory region 679061	1742 bp proximal
Tssr89614	transcription start site region 89614	1731 bp downstream