rs46999891 SNP Detail

Summary

• ID
  rs46999891
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:29408672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAAGAAAAA AAGACTTTAG GAGTCTTTTA TTTTTAACCT
  TAATTTTCTA CCTCTCTCAT TAGTGATGTT TCTAAACCTT TAAGAAAATG ACGCTATTAC
  Y
  ACAAAGCAAA CGTGATACTC CCAATTGCTC TCTTAAGTTT CCTTATGGTG GAAAAAGAGA
  AATGTCTGGC CAGTTTTAAA ATAATTTGAC TACTGCCTTA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52217123	NES15216640	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46999891					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52217123	NES15216640	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:29408672 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1415	CpG island 1415	853 bp proximal
Cpgi1416	CpG island 1416	1800 bp proximal
Rr429491	regulatory region 429491	164 bp proximal
Rr429492	regulatory region 429492	284 bp proximal
Rr429493	regulatory region 429493	458 bp proximal
Rr429494	regulatory region 429494	1551 bp proximal
Rspo3	R-spondin 3	Intron