rs47000768 SNP Detail

Summary

• ID
  rs47000768
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:10219763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCAAGAAG GAAAAGTTGA
  CCTTGTCCAG TATCTGCTAA TTCTACGTCA ATGTGGAACG AGAGGAGTGG AAGCTTGATA
  CATTGTGCGA CTTGTATAAA ACATTGGCCA TCAACCAGGC AGTAACCTTT GTCAATACCA
  GAAGGAAGGT GGGCTGGCTC ACTGAGAAGA TGCGTGCCTG GGATTTCACT GTTTCCACCA
  Y
  GCATGGAGCT ATGGACCAAA AGCAATGAGG TGTGATCATG AGGGAGTTCC AGTCTGGCTC
  TAGCAGAGTT ATTAATTACC ACAGACTTGT TGGCCAGAGC CACTGATGTG CAGCGGGTTT
  CCTTAGTCAT CAACAATGAC CTTTCACCAA CAGGGAAACT ATGTTCACAG AACTGGTTAA
  GGTGGTTGGT TTGGCCGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss52144223	NES15239588	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs47000768					SNP	T	T	T	C	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52144223	NES15239588	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:10219763 () rs orientation: forward

Symbol	Name	Function Class
Adgb	androglobin	within coordinates
Gm15568	predicted gene 15568	within coordinates
Rr221322	regulatory region 221322	39 bp proximal
Tssr92346	transcription start site region 92346	918 bp downstream
Tssr96688	transcription start site region 96688	714 bp downstream