rs47001237 SNP Detail

Summary

• ID
  rs47001237
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:86929721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCC TTTAGCTCAC GCTCCTGGTC
  S
  GTGCTCGACA CCGATCCAGG CCTCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52452462	NES15424530	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47001237					SNP	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52452462	NES15424530	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:86929721 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4926	CpG island 4926	within coordinates
Irf2bpl	interferon regulatory factor 2 binding protein-like	within coordinates
Rr387576	regulatory region 387576	12 bp upstream
Tssr3903	transcription start site region 3903	1123 bp downstream
Tssr117130	transcription start site region 117130	965 bp downstream
Tssr117131	transcription start site region 117131	998 bp downstream
Tssr117132	transcription start site region 117132	1454 bp downstream
Tssr117133	transcription start site region 117133	1519 bp downstream
Tssr117134	transcription start site region 117134	1756 bp downstream
Tssr117135	transcription start site region 117135	1769 bp downstream
Tssr117136	transcription start site region 117136	1809 bp downstream
Tssr117137	transcription start site region 117137	1861 bp downstream
Tssr117138	transcription start site region 117138	1899 bp downstream