rs47001342 SNP Detail

Summary

• ID
  rs47001342
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55206402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGGTGAGAA GGACCATTCC TTTGTTACCT GGCTCCCCCG
  TCTCTGTCTG TTCCTGTGTC TACCTTCTGT TCCCTGTCTC GACATTAACC CTAGCCTCTG
  S
  TGTTCTGGTG CTCTGCCTTC AGCAGGCTGA TTTCACGGAG CGCTCAACCT GGCTTGTCCT
  TGCTTCCATG TCTTGCCCCG GGGTCCTTCT TCTACTCTC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52723012	NES15567945	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47001342					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52723012	NES15567945	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55206402 () rs orientation: forward

Symbol	Name	Function Class
Mhrt	myosin heavy chain associated RNA transcript	within coordinates
Myh7	myosin, heavy polypeptide 7, cardiac muscle, beta	1739 bp downstream
Rr407057	regulatory region 407057	1162 bp distal
Rr492379	regulatory region 492379	1814 bp distal
Rr492380	regulatory region 492380	140 bp distal
Rr492381	regulatory region 492381	716 bp proximal
Tssr125718	transcription start site region 125718	262 bp downstream
Tssr125719	transcription start site region 125719	170 bp downstream
Tssr125720	transcription start site region 125720	145 bp downstream
Tssr125721	transcription start site region 125721	133 bp downstream
Tssr125722	transcription start site region 125722	281 bp upstream
Tssr125723	transcription start site region 125723	350 bp upstream
Tssr125724	transcription start site region 125724	362 bp upstream
Tssr125725	transcription start site region 125725	1222 bp upstream
Tssr125726	transcription start site region 125726	1247 bp upstream
Tssr125727	transcription start site region 125727	1280 bp upstream
Tssr128745	transcription start site region 128745	1723 bp upstream
Tssr128746	transcription start site region 128746	970 bp upstream
Tssr128747	transcription start site region 128747	946 bp upstream
Tssr128748	transcription start site region 128748	902 bp upstream
Tssr128749	transcription start site region 128749	871 bp upstream
Tssr128750	transcription start site region 128750	849 bp upstream
Tssr128751	transcription start site region 128751	843 bp upstream
Tssr128752	transcription start site region 128752	784 bp upstream
Tssr128753	transcription start site region 128753	585 bp upstream
Tssr128754	transcription start site region 128754	515 bp upstream
Tssr128755	transcription start site region 128755	1770 bp downstream
Tssr128756	transcription start site region 128756	1787 bp downstream